![]() The major advantages of this plugin over other implementations are: Its internal algorithm to collect data is based upon how Sholl analysis is done by hand - it creates a series of concentric shells (circles or spheres) around the focus of a neuronal arbor, and counts how many times connected voxels defining the arbor intersect the sampling shells. This plugin can perform Sholl directly on 2D and 3D grayscale images of isolated neurons. The Sholl technique is used to describe neuronal arbors. Critical radius ( r c) and Mean value ( N av) are indicated. Warmer hues indicate higher number of Intersections ( N). Methods inherited from interface hippocampal CA1 cell (juvenile mouse) in which apical and basal dendrites have been analyzed separately and color coded according to their Sholl profile.Methods inherited from class finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait.Roi abortModification, abortPaste, addRoiListener, clone, containsPoint, convertLineToArea, convertToPolygon, copyAttributes, create, drawOverlay, drawPixels, enableSubPixelResolution, endPaste, equals, getAngle, getAntiAlias, getBoundingRect, getBounds, getColor, getContainedFloatPoints, getContainedPoints, getContourCentroid, getConvexHull, getCornerDiameter, getCPosition, getCurrentPasteMode, getDebugInfo, getDefaultFillColor, getDefaultGroup, getDefaultHandleSize, getDefaultStrokeWidth, getDrawOffset, getFeretsDiameter, getFeretValues, getFillColor, getFloatAngle, getFloatBounds, getFloatConvexHull, getFloatHeight, getFloatPolygon, getFloatWidth, getGroup, getGroupName, getGroupNames, getHandleSize, getHashCode, getImage, getImageID, getInterpolatedPolygon, getInterpolatedPolygon, getInterpolatedPolygon, getInverse, getListeners, getMagnification, getMask, getName, getPasteMode, getPosition, getPreviousRoi, getProperties, getProperty, getPropertåount, getPrototypeOverlay, getRoundRectArcSize, getScaledStroke, getScaleStrokeWidth, getState, getStatistics, getStroke, getStrokeColor, getStrokeWidth, getTPosition, getType, getTypeAsString, getXBase, getYBase, getZPosition, handleMouseDrag, hasHyperStackPosition, isActiveOverlayRoi, isArea, isCursor, isDrawingTool, isInteger, isLine, isLineOrPoint, isVisible, lineCircleIntersection, magnificationForSubPixel, magnificationForSubPixel, mouseDragged, mouseReleased, notifyListeners, nudge, offScreenX, offScreenXD, offScreenY, offScreenYD, removeRoiListener, resetDefaultHandleSize, saveGroupNames, screenX, screenXD, screenY, screenYD, setAntiAlias, setBounds, setColor, setCornerDiameter, setDefaultColor, setDefaultFillColor, setDefaultGroup, setDefaultStrokeWidth, setDrawOffset, setFillColor, setFlattenScale, setGroup, setGroupName, setGroupNames, setHandleSize, setIgnoreClipRect, setImage, setInstanceColor, setIsCursor, setLineWidth, setName, setNonScalable, setPasteMode, setPosition, setPosition, setPosition, setPreviousRoi, setProperties, setProperty, setPrototypeOverlay, setRenderingHint, setRotationCenter, setRoundRectArcSize, setStroke, setStrokeColor, setStrokeWidth, setUnscalableStrokeWidth, startPaste, temporarilyHide, toFloat, toInt, toInt, toIntR, toString, update, updateClipRect, updateWideLine, useLineSubpixelConvention, xor Constructor Summary Constructors Constructor.Roi ANGLE, asp_bk, aspect, cachedMask, center, clipboard, clipHeight, clipWidth, clipX, clipY, COMPOSITE, constrain, CONSTRUCTING, defaultColor, defaultFillColor, FERET_ARRAY_POINTOFFSET, FERET_ARRAYSIZE, fillColor, flattenScale, FREELINE, FREEROI, HANDLE_SIZE, handleColor, ic, ignoreClipRect, imp, instanceColor, LINE, lineWidth, mag, MOVING, MOVING_HANDLE, nonScalable, NORMAL, NOT_PASTING, oldHeight, oldWidth, oldX, oldY, onePixelWide, OVAL, overlay, pasteMode, POINT, POLYGON, POLYLINE, previousRoi, RECTANGLE, RESIZING, ROIColor, stroke, strokeColor, TRACED_ROI, type, updateFullWindow, wideLine, xMax, yMax ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |